INC ACADEMY

INC Academy is organised by the International Nucleome Consortium (INC) funded by the COST action. Our virtual events are every second Thursday at 5pm CET, 4pm BST, 8am PDT. These include hands-on tutorials, regular webinars, reports from short-term scientific missions and more. The schedule of future events and the list of past events are provided below.

If you want to give a talk, tutorial or short project report, click on the registration button and fill your information to be selected. Thanks in advance for your participation.

June 28 – July 1st, 2022

Graphic design by scisters.editions

Pictures credits: Maxime Torora (Jost Lab) & Silvia Kocanova (Bystricky lab)

SYMPOSIUM & ANNUAL MC MEETING

CBI, Toulouse, France

Nuclear Architecture & Function

Dealine for registration: May 15th, 2022

May 19th, 2022

5pm CET, 4pm GMT

Graphic design based on “reconstituted chromatin prepared from 12-mer tandem repeats of a strong nuclear positioning sequence and purified histones.” Photo credit: ‘Grigoryev et al. 2009 Evidence for heteromorphic chromatin fibers from analysis of nucleosome interactions. Proc Natl Acad Sci USA 106:13317-13322’.

Biola M Javierre

IJC, Barcelona, Spain

Low input capture Hi-C (liCHi-C): a new method to decipher the molecular mechanisms underlying non-coding alterations

Alonso J Pardal (Bowman group)

The University of Warwick, UK

Import and chaperoning of monomeric histones

April 7, 2022

5pm CET, 4pm GMT

Graphic design based on “Transmission electron micrograph of a bone marrow orthochromatic erythroblast from guinea pig showing terminal differentiation in erythrocyte formation.” Photo credit: ‘The Cell, 2nd Ed.’ by Don W. Fawcett M.D.

Chirag Nepal (Andersen lab)

BRIC, University of Copenhagen, Denmark

“Transcription of liver cancer alternative promoters in CpG depleted regions is epigenetically regulated

Preetish Kadur Lakshminarasimha Murthy (Tata lab)

Duke University, Durham, NC USA

“Epigenetic basis of oncogenic-Kras-mediated epithelial-cellular proliferation and plasticity”

PAST EVENTS & VIDEOS

WEBINARS

Leonie Ringrose

“Theoretical and experimental investigation of Z-DNA as an epigenetic switch”

Irene Farabella

“Three-dimensional genome organization via triplex-forming RNAs”

Amith Zafal Abdulla

“Painters in chromatin: a unified framework for the establishment and maintenance of the epigenomic information”

Kristan Piroeva

“Nucleosome repositioning in chronic lymphocytic leukemia”

Liudmila Mikheeva

“The role of insulators and transcription in 3D chromatin organisation of flies”

Guillermo Orsi

“Chromatin contortions to fit into the cricket sperm nucleus”

Jian Ma

“NIH 4DN and the nuclear architecture research in my lab”

Argyris Papantonis

“Spatial genome architecture in development and disease”

Wu Chao-Ting

“Develop, implement, and disseminate imaging, analysis, and modeling tools for elucidating the 3D organization of genomes in their entirety”

Job Dekker

“Effects of cohesin ring opening on chromosome folding”

Jan-Michael Peters

“Does cohesin mediate DNA loop extrusion and sister chromatid cohesion through distinct or related mechanisms?”

Adele Marston

“Chromosome organization in meiosis”

Maria Carmo-Fonseca

“The challenge of measuring splicing kinetics”

Guillaume Andrey

“The regulatory, transcriptional and phenotypical costs of non-coding mutations at the Pitx1 locus”

Luca Fiorillo & Francesco Musella

“Comparison of the Hi-C, GAM and SPRITE methods by using polymer models of chromatin”

Gabriele Girelli

“A journey to the center of the nucleus – developing GPSeq”

Haitham Shaban

“Nanoscale Imaging of chromatin structure and dynamics in Single Living Cells”

Jekaterina Erenpreisa

“Cancer cells reveal scale-free genome regulation by pericentric chromatin domains”

Judith Zaugg

“Predictive Gene Regulatory Network Models to Study Ageing and Disease Mechanisms”

Chris Toseland

“Nanoscale organisation of transcription regulated by nuclear myosins”

Alberto Bueno-Costa

“Epigenetic and Epitranscriptomic changes in leukemic transdifferentiation”

Andréa Willemin

“Context-independent function of a topological boundary in mice”

Annick Lesne

“ShRec3D: combining distance geometry and contact networks for a fast and easy 3D genome reconstruction”

Kiran Kumari

“Computing the spatial organization and dynamics of chromatin domains”

Hossein Salari

“How heterogeneous organization of interphase chromosome leads to local anomalous diffusions”

Rodrigo Villaseñor

“Chromatin meets its proteome – revealing genome function through chromatin proteomics”

Mario Nicodemi

“Polymer phase separation controls chromatin architecture in single-cells”

Maria Cristina Gambetta

“Molecular basis of gene insulation in Drosophila”

Gesa Loof

“Specific 3D genome topologies distinguish epiblast and primitive endoderm in the early embryo”

Michał Kadlof

“Chromatin modelling methods”

Marco Di Stefano

“Epigenomics-based modeling of the Arabidopsis thaliana genome”

Todor Gitchev

“Dynamic modelling of chromosome folding in C. elegans suggests in vivo z-loops formation”

Melita Vidaković

“Epi-cure: Epi-CRISPR targeted DNA methylation of Arx gene as a potential therapeutic strategy in diabetes”

Marc A. Marti Renom

“Chromosome walking with super-resolution imaging and modeling”

TUTORIALS

Jonas Paulsen

“Using Chrom3D to generate 3D genome models”

ANNUAL WG MEETING

December 3, 2020

Presentation of INC working group activities

WG1: Network building and strengthening | slides | video

Communication Team | slides | video

WG2: Challenging the frontiers of experimental resolution | slides | video

WG3: Developing big data analysis and applying 3D modelling tools | slides | video

WG4: Exploit the Nucleome in heatlh and agriculture | slides | video

WG5: Nucleome inspired technology transfer | slides | video

poster gallery

ORGANIZING COMMITTEE

Tuncay Baubec

Maria Cristina Gambetta

Sarah Hurtado-Bagès

Daniel Jost

Vladimir Teif

Melita Vidaković