INC ACADEMY

INC Academy is organised by the International Nucleome Consortium (INC) funded by the COST action. Our virtual events are every second Thursday at 5pm CET, 4pm BST, 8am PDT. These include hands-on tutorials, regular webinars, reports from short-term scientific missions and more. The schedule of future events and the list of past events are provided below.

If you want to give a talk, tutorial or short project report, click on the registration button and fill your information to be selected. Thanks in advance for your participation.

REGISTRATION TO GIVE A TALK

July 1, 2021

2:30 – 5:30pm CET | 1:30 – 4:30pm BST

Graphic design by Jan Paleček (SMC complexes and loop extrusion representation)

Job Dekker

University of Massachusetts Medical School, Worcester, USA

“Effects of cohesin ring opening on chromosome folding”

Stephan Gruber

University of Lausanne, Lausanne, Switzerland

“Smc-Smc encounters in bacterial chromosome organization”

Adele Marston

University of Edinburgh, Edinburgh, UK

“Chromosome organisation in meiosis”

Jan-Michael Peters

Vienna Center, Vienna, Austria

“How cohesin folds the genome by loop extrusion”

Frank Uhlmann

The Francis Crick Institute, London, UK

“Lifting the Lid on Loop Extrusion”

Registration

June 17, 2021

5pm CET, 4pm BST, 8am PDT

Graphic design based on “several 3D reconstruction of human chromosomes (chr2, chr6, chr10, chr11 & chr15) using ShRec3D method (see INC software repository), applied to Hi-C data from human embryonic stem cells (published in Dixon et al. Nature 2012).”

@ J. Mozziconacci & A. Lesne.

Maria Carmo-Fonseca

Institute of Molecular Medicine, University of Lisbon, Portugal

“The challenge of measuring splicing kinetics“

Gabriele Girelli (Magda Bienko Lab)

Karolinska Institutet, Sweden

“A journey to the center of the nucleus – developing GPSeq“

Registration closed

June 3, 2021

5pm CET, 4pm BST, 8am PDT

Graphic design based on “several 3D reconstruction of human chromosomes (chr2, chr6, chr10, chr11 & chr15) using ShRec3D method (see INC software repository), applied to Hi-C data from human embryonic stem cells (published in Dixon et al. Nature 2012).”

@ J. Mozziconacci & A. Lesne.

Guillaume Andrey

University of Geneva, Switzerland

“The regulatory, transcriptional and phenotypical costs of non-coding mutations at the Pitx1 locus“

Luca Fiorillo & Francesco Musella (Mario Nicodemi lab)

Università degli Studi di Napoli Federico II, Italy

“Comparison of the Hi-C, GAM and SPRITE methods by using polymer models of chromatin“

Registration closed

May 20, 2021

5pm CET, 4pm BST, 8am PDT

Graphic design based on “Dapi and mature muscle staining – mouse muscle cell line” image by Sarah Hurtado-Bagès.

Jekaterina Erenpreisa

Latvian Biomedical Research and Study Centre, Riga, Latvia

“Cancer cells reveal scale-free genome regulation by pericentric chromatin domains“

Haitham Shaban (David Suter lab)

Bio-engineering institute, EPFL, Lausanne, Switzerland

“Nanoscale Imaging of chromatin structure and dynamics in Single Living Cells”

Registration closed

May 6, 2021

5pm CET, 4pm BST, 8am PDT

Graphic design based on “Dapi and mature muscle staining – mouse muscle cell line” image by Sarah Hurtado-Bagès.

Judith Zaugg

EMBL Heidelberg, Germany

“Predictive Gene Regulatory Network Models to Study Ageing and Disease Mechanisms“

Antoine Hocher (Tobias Warneke lab)

MRC London Institute of Medical Sciences, UK

“A quantitative view of archaeal chromatin“

Registration closed

April 22, 2021

5pm CET, 4pm BST, 8am PDT

Graphic design based on “Dapi and mature muscle staining – mouse muscle cell line” image by Sarah Hurtado-Bagès.

Chris Toseland

University of Sheffield, UK

“Nanoscale organisation of transcription regulated by nuclear myosins”

Alberto Bueno-Costa (Manel Esteller lab)

Josep Carreras Leukaemia Research Institute, Badalona, Spain

“Epigenetic and Epitranscriptomic changes in leukemic transdifferentiation“

Registration closed

ORGANIZING COMMITTEE

Tuncay Baubec

Maria Cristina Gambetta

Sarah Hurtado-Bagès

Daniel Jost

Vladimir Teif

Melita Vidaković

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PAST EVENTS

April 8, 2021

Annick Lesne

CNRS, LPTMC in Paris – IGMM in Montpellier

“ShRec3D: combining distance geometry and contact networks for a fast and easy 3D genome reconstruction“

Andréa Willemin (Denis Duboule lab)

University of Geneva – UNIGE, Switzerland

“Context-independent function of a topological boundary in mice“

March 25, 2021

Hossein Salari (Daniel Jost lab)

LBMC, ENS Lyon, France

“How heterogeneous organization of interphase chromosome leads to local anomalous diffusions“

Kiran Kumari (Ranjith Padinhateeri lab)

IIT Bombay, India and Monash University, Australia

“Computing the spatial organization and dynamics of chromatin domains“

March 11, 2021

Mario Nicodemi

Università di Napoli, Italy

“Polymer phase separation controls chromatin architecture in single-cells“

Rodrigo Villaseñor (Lab of Tuncay Baubec)

University of Zurich, Switzerland

“Chromatin meets its proteome – revealing genome function through chromatin proteomics“

February 25, 2021

Maria Cristina Gambetta

University of Lausanne, Switzerland

“Molecular basis of gene insulation in Drosophila”

Gesa Loof

MDC – BIMSB, Berlin, Germany

“Specific 3D genome topologies distinguish epiblast and primitive endoderm in the early embryo”

February 11, 2021

Women in INC – International Day of Women & Girls in Science

Round table: “Women experiences and initiatives for women in INC”

. Pernette Verschure (University of Amsterdam, Netherlands)
. Melita Vidaković (University of Belgrade, Serbia)
. Maria Cristina Gambetta (University of Lausanne, Switzerland)
. Hulkar Mamayusupova (University of Essex, UK)
. Anja Tolić (University of Belgrade, Serbia)
. Alessandra Merlotti (University of Bologna, Italy)
. Sarah Hurtado-Bagès (scisters.editions agency, Saint-Étienne, France)