INC Academy is organised by the International Nucleome Consortium (INC) funded by the COST action. Our virtual events are every second Thursday at 5pm CET, 4pm BST, 8am PDT. These include hands-on tutorials, regular webinars, reports from short-term scientific missions and more. The schedule of future events and the list of past events are provided below.

If you want to give a talk, tutorial or short project report, click on the registration button and fill your information to be selected. Thanks in advance for your participation.

Oct 13, 2022
5pm CET, 4pm GMT
Graphic design based on “Ashwin Inala, Eileen Shiuan (2019) CIL:50661, Homo sapiens, Umbilical vein endothelial cell . CIL. Dataset. CIL. Dataset.”.
Christine Cucinotta
Tsukiyama lab, Fred Hutchinsons Cancer Center, Seattle, Washington
Chromatin reprogramming during quiescence entry and exit
Dana Lorber
Volk lab, Weizmann Institute of Science, Rehovot, Israel
Evaluation of mesoscale chromatin organization in vivo

VIDEOS -webinars

Dana Lorber

“Evaluation of mesoscale chromatin organization in vivo”

Christine Cucinotta

“Chromatin reprogramming during quiescence entry and exit”

Michela Maresca

“Continuous pioneer activity is required for maintaining pluripotency specific gene expression”

Aymen Attou

“Effects of CTCF and Cohesin complexes on chromatin architecture and genome topology”

Nathalie Bastié

“Mechanisms controlling the translocase activity that establishes cohesin dependent chromatin loops”

Jan Paleček

“Architecture and evolution of SMC (Structural Maintenance of Chromosomes) complexes”

Vera Pancaldi

“3D chromatin rearrangements in differentiation and cancer through the lens of network theory”

Ikbal Agah Ince

“Epigenetic regulation of Influenza virus infection”

Rafael Galupa

“Inter-TAD communication at the X-inactivation centre”

Winnok De Vos

“Vulnerability of the nuclear envelope in disease”

Huaiying Zhang

“Phase separation mediated nuclear organization in ALT cancer”

Alonso Javier Pardal

“Import and chaperoning of monomeric histones”

Chirag Nepal

“Transcription of liver cancer alternative promoters in CpG depleted regions is epigenetically regulated”

Leonie Ringrose

“Theoretical and experimental investigation of Z-DNA as an epigenetic switch”

Irene Farabella

“Three-dimensional genome organization via triplex-forming RNAs”

Amith Zafal Abdulla

“Painters in chromatin: a unified framework for the establishment and maintenance of the epigenomic information”

Kristan Piroeva

“Nucleosome repositioning in chronic lymphocytic leukemia”

Liudmila Mikheeva

“The role of insulators and transcription in 3D chromatin organisation of flies”

Guillermo Orsi

“Chromatin contortions to fit into the cricket sperm nucleus”

Jian Ma

“NIH 4DN and the nuclear architecture research in my lab”

Argyris Papantonis

“Spatial genome architecture in development and disease”

Wu Chao-Ting

“Develop, implement, and disseminate imaging, analysis, and modeling tools for elucidating the 3D organization of genomes in their entirety”

Job Dekker

“Effects of cohesin ring opening on chromosome folding”

Jan-Michael Peters

“Does cohesin mediate DNA loop extrusion and sister chromatid cohesion through distinct or related mechanisms?”

Adele Marston

“Chromosome organization in meiosis”

Maria Carmo-Fonseca

“The challenge of measuring splicing kinetics”

Guillaume Andrey

“The regulatory, transcriptional and phenotypical costs of non-coding mutations at the Pitx1 locus”

Luca Fiorillo & Francesco Musella

“Comparison of the Hi-C, GAM and SPRITE methods by using polymer models of chromatin”

Gabriele Girelli

“A journey to the center of the nucleus – developing GPSeq”

Haitham Shaban

“Nanoscale Imaging of chromatin structure and dynamics in Single Living Cells”

Jekaterina Erenpreisa

“Cancer cells reveal scale-free genome regulation by pericentric chromatin domains”

Judith Zaugg

“Predictive Gene Regulatory Network Models to Study Ageing and Disease Mechanisms”

Chris Toseland

“Nanoscale organisation of transcription regulated by nuclear myosins”

Alberto Bueno-Costa

“Epigenetic and Epitranscriptomic changes in leukemic transdifferentiation”

Andréa Willemin

“Context-independent function of a topological boundary in mice”

Annick Lesne

“ShRec3D: combining distance geometry and contact networks for a fast and easy 3D genome reconstruction”

Kiran Kumari

“Computing the spatial organization and dynamics of chromatin domains”

Hossein Salari

“How heterogeneous organization of interphase chromosome leads to local anomalous diffusions”

Rodrigo Villaseñor

“Chromatin meets its proteome – revealing genome function through chromatin proteomics”

Mario Nicodemi

“Polymer phase separation controls chromatin architecture in single-cells”

Maria Cristina Gambetta

“Molecular basis of gene insulation in Drosophila”

Gesa Loof

“Specific 3D genome topologies distinguish epiblast and primitive endoderm in the early embryo”

Michał Kadlof

“Chromatin modelling methods”

Marco Di Stefano

“Epigenomics-based modeling of the Arabidopsis thaliana genome”

Todor Gitchev

“Dynamic modelling of chromosome folding in C. elegans suggests in vivo z-loops formation”

Melita Vidaković

“Epi-cure: Epi-CRISPR targeted DNA methylation of Arx gene as a potential therapeutic strategy in diabetes”

Marc A. Marti Renom

“Chromosome walking with super-resolution imaging and modeling”


Jonas Paulsen

“Using Chrom3D to generate 3D genome models”


December 3, 2020
Presentation of INC working group activities
WG1: Network building and strengthening | slides | video

Communication Team | slides | video

WG2: Challenging the frontiers of experimental resolution | slides | video

WG3: Developing big data analysis and applying 3D modelling tools | slides | video

WG4: Exploit the Nucleome in heatlh and agriculture | slides | video

WG5: Nucleome inspired technology transfer | slides | video

poster gallery

Tuncay Baubec

Maria Cristina Gambetta

Sarah Hurtado-Bagès

Daniel Jost

Vladimir Teif

Melita Vidaković