INC ACADEMY
INC Academy is organised by the International Nucleome Consortium (INC) funded by the COST action. Our virtual events are every second Thursday at 5pm CET, 4pm BST, 8am PDT. These include hands-on tutorials, regular webinars, reports from short-term scientific missions and more. The schedule of future events and the list of past events are provided below.
If you want to give a talk, tutorial or short project report, click on the registration button and fill your information to be selected. Thanks in advance for your participation.
5pm CET, 4pm BST, 8am PDT
Graphic design based on “chromatin fibers from N. maculosus erythrocyte nuclei”
@ Woodcock Chris.
Gaëlle Legube
“Chromatin and Chromosome dynamics during DNA Double Strand break repair”
Kristan Piroeva (Teif lab)
“Nucleosome repositioning in chronic lymphocytic leukemia”
5pm CET, 4pm BST, 8am PDT
Graphic design based on “chromatin fibers from N. maculosus erythrocyte nuclei”
@ Woodcock Chris.
Guillermo Orsi
“Chromatin contortions to fit into the cricket sperm nucleus”
Liudmila Mikheeva (Zabet lab)
“The role of insulators and transcription in 3D chromatin organisation of flies”
September 09, 2021
3-5:30pm CET, 2-4:30pm BST
Graphic design based on “several 3D reconstruction of human chromosomes (chr2, chr6, chr10, chr11 & chr15) using ShRec3D method (see INC software repository), applied to Hi-C data from human embryonic stem cells (published in Dixon et al. Nature 2012).”
@ J. Mozziconacci & A. Lesne.
4DNucleomics research within large consortia
Jian Ma
Argyris “Akis” Papantonis
Ting Wu
July 1, 2021
2:30 – 5:30pm CET | 1:30 – 4:30pm BST
Graphic design by Jan Paleček (SMC complexes and loop extrusion representation)
Job Dekker
University of Massachusetts Medical School, Worcester, USA
“Effects of cohesin ring opening on chromosome folding”
Stephan Gruber
University of Lausanne, Lausanne, Switzerland
“Smc-Smc encounters in bacterial chromosome organization”
Adele Marston
University of Edinburgh, Edinburgh, UK
“Chromosome organisation in meiosis”
Jan-Michael Peters
Vienna Center, Vienna, Austria
“How cohesin folds the genome by loop extrusion”
Frank Uhlmann
The Francis Crick Institute, London, UK
“Lifting the Lid on Loop Extrusion”
June 17, 2021
5pm CET, 4pm BST, 8am PDT
Graphic design based on “several 3D reconstruction of human chromosomes (chr2, chr6, chr10, chr11 & chr15) using ShRec3D method (see INC software repository), applied to Hi-C data from human embryonic stem cells (published in Dixon et al. Nature 2012).”
@ J. Mozziconacci & A. Lesne.
Maria Carmo-Fonseca
Institute of Molecular Medicine, University of Lisbon, Portugal
“The challenge of measuring splicing kinetics“
Gabriele Girelli (Magda Bienko Lab)
Karolinska Institutet, Sweden
“A journey to the center of the nucleus – developing GPSeq“
June 3, 2021
5pm CET, 4pm BST, 8am PDT
Graphic design based on “several 3D reconstruction of human chromosomes (chr2, chr6, chr10, chr11 & chr15) using ShRec3D method (see INC software repository), applied to Hi-C data from human embryonic stem cells (published in Dixon et al. Nature 2012).”
@ J. Mozziconacci & A. Lesne.
Guillaume Andrey
University of Geneva, Switzerland
“The regulatory, transcriptional and phenotypical costs of non-coding mutations at the Pitx1 locus“
Luca Fiorillo & Francesco Musella (Mario Nicodemi lab)
Università degli Studi di Napoli Federico II, Italy
“Comparison of the Hi-C, GAM and SPRITE methods by using polymer models of chromatin“
ORGANIZING COMMITTEE
Tuncay Baubec
Maria Cristina Gambetta
Sarah Hurtado-Bagès
Daniel Jost
Vladimir Teif
Melita Vidaković
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Join our Slack channel!PAST EVENTS
May 20, 2021
Jekaterina Erenpreisa
Latvian Biomedical Research and Study Centre, Riga, Latvia
“Cancer cells reveal scale-free genome regulation by pericentric chromatin domains“
Haitham Shaban (David Suter lab)
Bio-engineering institute, EPFL, Lausanne, Switzerland
“Nanoscale Imaging of chromatin structure and dynamics in Single Living Cells”
May 6, 2021
Judith Zaugg
EMBL Heidelberg, Germany
“Predictive Gene Regulatory Network Models to Study Ageing and Disease Mechanisms“
Antoine Hocher (Tobias Warneke lab)
MRC London Institute of Medical Sciences, UK
“A quantitative view of archaeal chromatin“
No video is available for this talk
April 22, 2021
Chris Toseland
University of Sheffield, UK
“Nanoscale organisation of transcription regulated by nuclear myosins”
Alberto Bueno-Costa (Manel Esteller lab)
Josep Carreras Leukaemia Research Institute, Badalona, Spain
“Epigenetic and Epitranscriptomic changes in leukemic transdifferentiation“
April 08, 2021
Annick Lesne
CNRS, LPTMC in Paris – IGMM in Montpellier
“ShRec3D: combining distance geometry and contact networks for a fast and easy 3D genome reconstruction“
Andréa Willemin (Denis Duboule lab)
University of Geneva – UNIGE, Switzerland
“Context-independent function of a topological boundary in mice“
March 25, 2021
Hossein Salari (Daniel Jost lab)
LBMC, ENS Lyon, France
“How heterogeneous organization of interphase chromosome leads to local anomalous diffusions“
Kiran Kumari (Ranjith Padinhateeri lab)
IIT Bombay, India and Monash University, Australia
“Computing the spatial organization and dynamics of chromatin domains“
March 11, 2021
Mario Nicodemi
Università di Napoli, Italy
“Polymer phase separation controls chromatin architecture in single-cells“
Rodrigo Villaseñor (Lab of Tuncay Baubec)
University of Zurich, Switzerland
“Chromatin meets its proteome – revealing genome function through chromatin proteomics“
February 25, 2021
Maria Cristina Gambetta
University of Lausanne, Switzerland
“Molecular basis of gene insulation in Drosophila”
Gesa Loof
MDC – BIMSB, Berlin, Germany
“Specific 3D genome topologies distinguish epiblast and primitive endoderm in the early embryo”
February 11, 2021
Women in INC – International Day of Women & Girls in Science
Round table: “Women experiences and initiatives for women in INC”
. Pernette Verschure (University of Amsterdam, Netherlands)
. Melita Vidaković (University of Belgrade, Serbia)
. Maria Cristina Gambetta (University of Lausanne, Switzerland)
. Hulkar Mamayusupova (University of Essex, UK)
. Anja Tolić (University of Belgrade, Serbia)
. Alessandra Merlotti (University of Bologna, Italy)
. Sarah Hurtado-Bagès (scisters.editions agency, Saint-Étienne, France)
January 28, 2021
Kerstin Bystricky
MCD-CBI, University Paul Sabatier, Toulouse, France
“Chromatin dynamics during transcription in living cells“
No video is available for this talk
December 17, 2020
Marianne Rots
University of Groningen, Netherlands
“Epigenetic editing: a highly flexible research tool with promising therapeutic applications“
No video is available for this talk
Marco Di Stefano
Institute of Human Genetics, Montpellier, France
“Epigenomics-based modeling of the Arabidopsis thaliana genome“
December 3, 2020
Presentation of INC working group activities
WG1: Network building and strengthening | slides | video
Communication Team | slides | video
WG2: Challenging the frontiers of experimental resolution | slides | video
WG3: Developing big data analysis and applying 3D modelling tools | slides | video
WG4: Exploit the Nucleome in heatlh and agriculture | slides | video
November 19, 2020
Melita Vidakovic
University of Belgrade, Serbia
“Epi-cure: Epi-CRISPR targeted DNA methylation of Arx gene as a potential therapeutic strategy in diabetes”
Todor Gitchev
University of Bern, Switzerland
“Dynamic modelling of chromosome folding in C. elegans suggests in vivo z-loops formation”
November 5, 2020
Tutorial by Jonas Paulsen
University of Oslo, Norway
“Using Chrom3D to generate 3D genome models”
October 22, 2020
Marc A. Marti-Renom
Centre for Genomic Regulation, Spain
“Structural determination of genomes and genomic domains”
Previous posters
